Version 12 (modified by pmajka, 13 years ago) (diff)


3dBAR reconstruction examples

Under construction - more examples soon.

Based on Paxinos and Watson The Rat Brain in Stereotaxic Coordinates

Examples of reconstructions based on Paxinos and Watson The Rat Brain in Stereotaxic Coordinates created with 3D Brain Atlas Reconstructor. Meshes are presented without any additional processing such as smoothing or complexity reduction in order to fully represent source data.

Reconstruction of whole brain Segmented reconstruction cortex:
(both archi and neocortex):
M1,M2 primary and secondary motor cortex
RSD - retrosplenial dysgranular cortex
V1 - primary visual cortex
OlfCx - olfactory cortex
S2 - secondary somatosensory cortex
S1ULp - primary somatosensory cortex,
upper lip region.

Thalamus Segmented reconstruction of thalamus:
LD - laterodorsal thalamic nucleus,
PO - posterior thalamic nuclear group,
LP - lateral posterior thalamic nucleus,
DLG - dorsal lateral geniculate nucleus,
MG - medial geniculate nucleus,
Rt - reticular thalamic nucleus,
PVA - paraventricular thalamic nucleus.

Pyramidal tract Segmented reconstruction of pyramidal tract:
ic - internal capsule,
lfp - longitudinal fasciculus of the pons,
cp - celebral penducles,
py - pyramids.

Based on  ScalableBrainAtlas templates

Segmented reconstruction of cortex:
6, 47 - area 6 and 47 of cortex,
PE - parietal area PE,
STreg - superior temporal sulcus
V1,V4 - visual area 1 and 4.
Reconstructions of cerebral cortex
and chosen subcortical structures:
Amg - amygdala,
Str - striatum,
CgG - cingulate gyrus,
FL,OL,PL - frontal, occipital and
parietal lobe,
Olf - olfactory bulb.

Based on  Waxholm Space Atlas

Reconstruction of whole brain Segmented reconstructions
of chosen brain structures:
SC - superior colliculus,
VS - ventricular system,
cb - cerebellum.


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