| 12 | | |
| 13 | | ||||||= Reproducing results from the article =|| |
| 14 | | ||= [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Figure 2] =||\ |
| 15 | | ||= [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Figure 3] =||\ |
| 16 | | ||= Figure 4 =|| |
| 17 | | || [[Image(figure_itksnap_src_small.jpg)]] || [[Image(figure_live_preview_small.jpg)]] || [[Image(figure_crw_small.jpg)]] || |
| 18 | | {{{#!td |
| 19 | | [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reconstructing Figure 2]:\\ |
| 20 | | Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain]\\ |
| 21 | | (Bowden et. al. 2003) loaded into \\ |
| 22 | | [http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006). |
| 23 | | }}} |
| 24 | | {{{#!td |
| 25 | | [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reconstructing Figure 3]:\\ |
| 26 | | Models of structures from the Allen\\ |
| 27 | | Mouse Brain Reference Atlas\\ |
| 28 | | (http://mouse.brain-map.org/): |
| 29 | | - brain stem, |
| 30 | | - cerebellum, |
| 31 | | - cerebral nuclei, |
| 32 | | - cerebral cortex. |
| 33 | | }}} |
| 34 | | {{{#!td |
| 35 | | The output from the Custom\\ |
| 36 | | Reconstruction Wizard according\\ |
| 37 | | to settings from Figure 4: |
| 38 | | - [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene], |
| 39 | | - [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image], |
| 40 | | - [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page]. |
| 41 | | }}} |
| 42 | | |
| | 29 | 4. Troubleshooting: |
| | 30 | - [wiki:WebGLIssue Live preview does not work in my browser] |
| | 31 | |
| | 32 | ||||||= Reproducing results from the article =|| |
| | 33 | ||= [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Figure 2] =||\ |
| | 34 | ||= [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Figure 3] =||\ |
| | 35 | ||= Figure 4 =|| |
| | 36 | || [[Image(figure_itksnap_src_small.jpg)]] || [[Image(figure_live_preview_small.jpg)]] || [[Image(figure_crw_small.jpg)]] || |
| | 37 | {{{#!td valign=top |
| | 38 | [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reconstructing Figure 2]:\\ |
| | 39 | Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain]\\ |
| | 40 | (Bowden et. al. 2003) loaded into \\ |
| | 41 | [http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006). |
| | 42 | }}} |
| | 43 | {{{#!td valign=top |
| | 44 | [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reconstructing Figure 3]:\\ |
| | 45 | Models of structures from the Allen\\ |
| | 46 | Mouse Brain Reference Atlas\\ |
| | 47 | (http://mouse.brain-map.org/): |
| | 48 | - brain stem, |
| | 49 | - cerebellum, |
| | 50 | - cerebral nuclei, |
| | 51 | - cerebral cortex. |
| | 52 | }}} |
| | 53 | {{{#!td valign=top |
| | 54 | The output from the Custom\\ |
| | 55 | Reconstruction Wizard according\\ |
| | 56 | to settings from Figure 4: |
| | 57 | - [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene], |
| | 58 | - [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image], |
| | 59 | - [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page]. |
| | 60 | }}} |
| | 61 | |
| | 62 | |