3d Brain Atlas Reconstructor on-line service ¶

Supported by an infrastructural grant
from the Polish Ministry of Regional Development
POIG.02.03.00-00-003/09

Available services ¶

getCafInfo ¶

Returns the index file of selected CAF dataset. Index file contains the list of structures available for reconstruction, their hierarchy and the list of slides within the given dataset.

Examples ¶

•  http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51
•  http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51;listSlides=False;listStructures=False

getReconstruction ¶

Returns a model of a given structure from selected dataset as a zip file containing the reconstruction and a short description.

Examples ¶

•  http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus
•  http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus;qualityPreset=high;outputFormat=x3d

getPreview ¶

Displays a window allowing to manipulate (rotate, zoom, etc.) lightweight version of the reconstuciton. Note that the web browser has to support  WebGL in order to use this feature.

Examples ¶

•  http://service.3dbar.org/getPreview?cafDatasetName=whs_0.51&structureName=CNS
•  http://service.3dbar.org/getPreview?cafDatasetName=whs_0.5&structureName=Hc
•  http://service.3dbar.org/getPreview?cafDatasetName=sba_DB08&structureName=FBr

getThumbnail ¶

Returns a thumbnail of the reconstruction of a given structure available via getReconstruction in png format.

Examples ¶

•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=corpus-callosum
•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=thalamus
•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=CNS
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=FL
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=LV
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_PHT00;structureName=Brain

getCafSlide ¶

Returns an SVG image with CAF slide filtered by provided settings.

Examples ¶

•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460
•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showMask=True;showLabels=False
•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showLabels=False
•  http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx
•  http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx,Th

Available datasets ¶

The Waxholm Space mouse atlas, 2010 delineation (whs_0.51)

 http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51

The Waxholm Space mouse atlas, 2009 delineation (whs_0.5)

 http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.5

NeuroMaps Macaque Atlas from  SBA template (sba_DB08)

 http://service.3dbar.org/getCafInfo?cafDatasetName=sba_DB08

Rhesus Monkey, Paxinos et al. 2000 from  SBA template (sba_PHT00)

 http://service.3dbar.org/getCafInfo?cafDatasetName=sba_PHT00

 SBA template of Waxholm Space mouse atlas (sba_WHS09)

 http://service.3dbar.org/getCafInfo?cafDatasetName=sba_WHS09

 SBA template of Waxholm Space mouse atlas (sba_WHS10)

 http://service.3dbar.org/getCafInfo?cafDatasetName=sba_WHS10