Changes between Version 21 and Version 22 of barSoftwareInstallation

Timestamp:

08/31/11 16:18:53 (13 years ago)

Author:

pmajka

Comment:

--

barSoftwareInstallation

@@ -1 @@
-//How to install 3d Brain Atlas Reconstructor on Ubuntu?//
-
 = 3d Brain Atlas Reconstructor Installation (Ubuntu) =
 
@@ -94 +92 @@
     * atlases/DATASET_NAME/reconstructions : The directory for reconstructed models.
 
-== Initial build ==
-=== Documentation ===
-In order to generate documentation execute:
-{{{
-make doc
-}}}
-
-The documentation for API can be viewed by opening '~/3dbar/doc/api/html/index.html'
-and the documentation for 3dBAR graphic interface can be viewed by opening
-'~/3dbar/doc/gui/html/index.html'.
-
-=== CAF datasets ===
-==== sba_DB08 ====
-In order to generate CAF dataset sba_DB08 execute:
-{{{
-source setbarenv.sh
-make sba_DB08
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_DB08/caf/' directory.
-
-==== sba_PHT00 ====
-In order to generate CAF dataset sba_PHT00 execute:
-{{{
-source setbarenv.sh
-make sba_PHT00
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_PHT00/caf/' directory.
-
-==== sba_WHS09 ====
-In order to generate CAF dataset sba_WHS09 execute:
-{{{
-source setbarenv.sh
-make sba_WHS09
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_WHS09/caf/' directory.
-
-==== sba_WHS10 ====
-In order to generate CAF dataset sba_WHS10 execute:
-{{{
-source setbarenv.sh
-make sba_WHS10
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_WHS10/caf/' directory.
-
-==== sba_RM_on_F99 ====
-In order to generate CAF dataset sba_RM_on_F99 execute:
-{{{
-source setbarenv.sh
-make sba_RM_on_F99
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_RM_on_F99/caf/' directory.
-
-==== sba_LPBA40_on_SRI24 ====
-In order to generate CAF dataset sba_LPBA40_on_SRI24 execute:
-{{{
-source setbarenv.sh
-make sba_LPBA40_on_SRI24
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/sba_LPBA40_on_SRI24/caf/' directory.
-
-==== whs_0.5 ====
-In order to generate CAF dataset whs_0.5 execute:
-{{{
-source setbarenv.sh
-make whs_0.5
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/whs_0.5/caf/' directory.
-
-==== whs_0.51 ====
-In order to generate CAF dataset whs_0.51 execute:
-{{{
-source setbarenv.sh
-make whs_0.51
-}}}
-
-Generated dataset can be found in '~/3dbar/atlases/whs_0.51/caf/' directory.
-
-
-== Testing the 3dBAR GUI ==
-Once you have a CAF dataset created you can test the GUI for structure creation.
-To do it in '~/3dbar' directory run:
-{{{
-./3dbar.sh
-}}}
-and choose in the menu //Atlas/Open// and select 'index.xml' file of chosen CAF dataset.
-
-To test, click the topmost label on the tree in the left panel and press
-'Perform reconstruction' button in the right panel. The reconstruction process
-will start. When it is finished, choose in the menu //Edit/Save Model//. It allows
-you to put it later in context by right click on the ontology tree.
-
-{{{#!comment
-== Initial build ==
-In order create initial CAF datasets, generate documentation use following command in /home/$USERNAME/3dbar/ directory:
-{{{
-make -B -j N all
-}}}
-
-where N is number of parallel processes You want to use. If everything is installed correctly processing should be performed without any errors. Then 3dBAR GUI should be launched
-{{{
-./3dbar.sh
-}}}
-and used to perform reconstructions. If everything went fine, You may proceed to :
-
-
-== Getting parsers for additional datasets ==
-}}}
+Then [wiki:barSoftwareInitialBuild check ] if the installation was successful.