Changes between Version 48 and Version 49 of barSoftwareErrorCorrection
- Timestamp:
- 12/15/11 13:19:00 (12 years ago)
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barSoftwareErrorCorrection
v48 v49 10 10 '''Left''': Coronal slice of a rat brain around 3 mm behind Bregma stained for Cytochrome Oxidase. Histological verification of the electrodes' location after chronic local field potentials (LFP) recording from the thalamic somatosensory nuclei. '''Middle''': Initial stage of manual preparation of a ''countour slide''. Main structures outlines drawn over the histology slice (line thickness increased for better visibility) and structure labels placed over well recognized regions. '''Right''': Histological slice visible through translucent final CAF slide. 11 11 12 [[Image( 006__final_comparison.png)]]12 [[Image(wiki:barSoftwareErrorCorrection:006__final_comparison.png)]] 13 13 14 14 ---- … … 57 57 '''Left''': Red blocks mark regions where irregular neighboring lines touch each other creating small closed areas. '''Middle''': Small areas were detected by the parser, traced and marked as Unlabelled. '''Right''': Adjusting the threshold number of pixels that should be traced by parser excluded incorrectly recognized tiny structures. 58 58 59 [[Image( 001__unlabelled_annotated.gif)]]59 [[Image(wiki:barSoftwareErrorCorrection:001__unlabelled_annotated.gif)]] 60 60 61 61 === Duplicated labels within a single contour === … … 83 83 [=#figure3]'''FIGURE 3.''' [[BR]] 84 84 85 [[Image( 003__invalid_labels_annotated.gif)]]85 [[Image(wiki:barSoftwareErrorCorrection:003__invalid_labels_annotated.gif)]] 86 86 ---- 87 87 … … 108 108 '''Left''': Contour slide containing small holes in contours. '''Middle''': CAF slide without ''gap filling'' enabled. ic,Rt and PoM, Ld pairs of structures are blended together. ZI overtakes the space of hypothalamus while Hb - space of thalamus. '''Right''': Analogous CAF slide with gap filling enabled. Structures are correctly divided. 109 109 110 [[Image( 002__gapfill_annotated.gif)]]110 [[Image(wiki:barSoftwareErrorCorrection:002__gapfill_annotated.gif)]] 111 111 112 112 ----
