Changes between Version 13 and Version 14 of barSoftwareErrorCorrection

Timestamp:

10/25/11 21:30:47 (13 years ago)

Author:

pmajka

Comment:

--

barSoftwareErrorCorrection

@@ -1 @@
-== Preparation of CAF slide from vector graphics ==
+= Preparation of CAF slide from vector graphics =
+
+[[PageOutline(1-3,Page contents:,pullout)]]
 
 === ''Contour slide''  ===
 
-In our work-flow we introduced a stage of ''contour slides'' - vector graphic in SVG format (for detailed description see Majka et al 2011) that simplifies necessary corrections, manual preparation of structures' outlines from histology results and further improvements of slide details. 
+In our work-flow we introduced a stage of ''contour slides'' - vector graphic in SVG format (for detailed description see Majka et al 2011) that simplifies necessary corrections, manual preparation of structures' outlines from histology results and further improvements of slide details. automatically
 
 Left: Coronal slice of a rat brain around 3 mm behind Bregma stained for Cytochrome Oxidase. Histological verification of the electrodes' location after chronic LFP recording from the thalamic somatosensory nuclei.
@@ -9 +11 @@
 Middle: Initial stage of manual preparation of a ''countour slide''. Main structures outlines drawn over the histology slice (line thickness increased for better visibility) and structure labels placed over well recognized regions.
 
-Right: Histological slide visible through translucent final CAF slide.
+Right: Histological slice visible through translucent final CAF slide.
 
 
@@ -17 +19 @@
 == Typical problems and their solutions ==
 Most commonly available 2D atlases were not designed to be used as
-sources for 3D models generation.  Precision of contour definitions
+sources for 3D models generation. Precision of contour definitions
 and label placement is sufficient for standard use, but not always for
 the automatic reconstruction process. For example, in some published atlases
@@ -155 +157 @@
 
 [[Image(007__final_electrode.png)]]
+
+== List of used abbreviations ==
+
+- vBrain
+- ec
+- LV
+- fi
+- Hipp
+- LD
+- Rt
+- ic
+- CPu
+- Ce
+- Amy
+- ot
+- ZI
+- mt
+- ml
+- VB
+- PoM
+- LD
+- Hb
+- D3V
+- 3V
+- Cx
+- S1BF