= Supplementary material = Web page http://www.3dbar.org/wiki/barServiceSupplement contains the most recent versions of supplementary materials for the article: (...) == ABSTRACT == (...) === Following supplementary materials are available: === 1. [wiki:barServiceServiceSyntax Documentation of the Application Programming Interface (API)] 2. Tutorials: - [wiki:barServiceUserGuideAccesingRecWizzard How to access the Custom Reconstruction Wizard?] - [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes How to use labeled volumes available at 3dBAR on-line service website?] 3. Screencasts: - [http://www.youtube.com/watch?v=bSzUYO1hWF0&feature=share&list=PL0BA8CA839C7981CB A whole playlist]: - [http://youtu.be/bSzUYO1hWF0?hd=1 Selecting an atlas], - [http://youtu.be/Nqnm9XE6P9c?hd=1 Displaying atlas details], - [http://youtu.be/-ZT7TF-FyYQ?hd=1 Switching the atlas], - [http://youtu.be/P3Al20QtDLk?hd=1 Browsing atlas slides], - [http://youtu.be/vO4dzBdpWnw?hd=1 3D model preview], - [http://youtu.be/wK4995zYJE0?hd=1 Browsing reconstructed models], - [http://youtu.be/lb4mdO_H_bc?hd=1 Requesting a custom reconstruction], - [http://youtu.be/t75t8s_wUcQ?hd=1 Using the user panel], - [http://youtu.be/L4EzPeVomSY?hd=1 Other features of 3D model preview], - [http://youtu.be/8vutD0l1iwU?hd=1 Requesting a composite custom reconstruction]. 4. [wiki:barServiceTroubleshooting Troubleshooting] ||||||= Reproducing results from the article =|| ||= [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Figure 2] =||\ ||= [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Figure 3] =||\ ||= Figure 4 =|| || [[Image(figure_itksnap_src_small.jpg)]] || [[Image(figure_live_preview_small.jpg)]] || [[Image(figure_crw_small.jpg)]] || {{{#!td valign=top [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reproducing Figure 2]:\\ Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain] (Bowden et. al. 2003) loaded into \\ [http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006). }}} {{{#!td valign=top [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reproducing Figure 3]:\\ Models of structures from the Allen Mouse Brain Reference Atlas\\ (http://mouse.brain-map.org/): - brain stem, - cerebellum, - cerebral nuclei, - cerebral cortex. }}} {{{#!td valign=top The output from the Custom\\ Reconstruction Wizard according\\ to settings from Figure 4: - [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene], - [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image], - [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page]. }}}