Changes between Version 12 and Version 13 of barServiceSupplement


Ignore:
Timestamp:
03/12/13 16:12:53 (11 years ago)
Author:
jkowalski
Comment:

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  • barServiceSupplement

    v12 v13  
    99(...) 
    1010 
    11 ==== Following supplementary materials are available: ==== 
     11=== Following supplementary materials are available: === 
    1212 
    13 0. Reproducing the results from the article. 
    14    - [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reproducing Figure 3]: Models of structures from the Allen Mouse Brain Reference Atlas (http://mouse.brain-map.org/): brain stem, cerebellum, cerebral nuclei and cerebral cortex.\\ 
    15      [[Image(figure_live_preview_small.jpg)]] 
    16    - The output from the Custom Reconstruction Wizard according to settings from Figure 4: [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene], [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image] and [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page].\\ 
    17      [[Image(figure_crw_small.jpg)]] 
    18    - [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reproducing Figure 2]: Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain] (Bowden et. al. 2003) loaded into [http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006).\\ 
    19      [[Image(figure_itksnap_src_small.jpg)]] 
     13||||||=  Reproducing results from the article  =|| 
     14||=  [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Figure 2]  =||\ 
     15||=  [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Figure 3]  =||\ 
     16||=  Figure 4  =|| 
     17||  [[Image(figure_itksnap_src_small.jpg)]]  ||  [[Image(figure_live_preview_small.jpg)]]  ||  [[Image(figure_crw_small.jpg)]]  || 
     18{{{#!td 
     19[http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reconstructing Figure 2]:\\ 
     20Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain]\\ 
     21(Bowden et. al. 2003) loaded into \\ 
     22[http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006). 
     23}}} 
     24{{{#!td 
     25[http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reconstructing Figure 3]:\\ 
     26Models of structures from the Allen\\ 
     27Mouse Brain Reference Atlas\\ 
     28(http://mouse.brain-map.org/): 
     29 - brain stem, 
     30 - cerebellum, 
     31 - cerebral nuclei, 
     32 - cerebral cortex. 
     33}}} 
     34{{{#!td 
     35The output from the Custom\\ 
     36Reconstruction Wizard according\\ 
     37to settings from Figure 4: 
     38 - [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene], 
     39 - [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image], 
     40 - [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page]. 
     41}}} 
     42 
     43 
    20441. [wiki:barServiceServiceSyntax Documentation of the Application Programming Interface (API)] 
    21452. Tutorials: 
     
    2347   - [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes How to use labeled volumes available at 3dBAR on-line service website?] 
    24483. Screencasts: 
    25    - [http://www.youtube.com/watch?v=bSzUYO1hWF0&feature=share&list=PL0BA8CA839C7981CB whole playlist]: 
     49   - [http://www.youtube.com/watch?v=bSzUYO1hWF0&feature=share&list=PL0BA8CA839C7981CB A whole playlist]: 
    2650   - [http://youtu.be/bSzUYO1hWF0?hd=1 Selecting an atlas], 
    2751   - [http://youtu.be/Nqnm9XE6P9c?hd=1 Displaying atlas details], 
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